LocaTT: Geographically-Conscious Taxonomic Assignment for Metabarcoding

A bioinformatics pipeline for performing taxonomic assignment of DNA metabarcoding sequence data while considering geographic location. A detailed tutorial is available at <https://urodelan.github.io/Local_Taxa_Tool_Tutorial/>. A manuscript describing these methods is in preparation.

Version: 1.1.1
Imports: utils, stats, taxize
Published: 2023-10-30
Author: Kenen Goodwin ORCID iD [aut, cre], Taal Levi [aut]
Maintainer: Kenen Goodwin <urodelan at gmail.com>
BugReports: https://github.com/Urodelan/LocaTT/issues
License: GPL (≥ 3)
URL: https://github.com/Urodelan/LocaTT
NeedsCompilation: no
Citation: LocaTT citation info
Materials: README
CRAN checks: LocaTT results

Documentation:

Reference manual: LocaTT.pdf

Downloads:

Package source: LocaTT_1.1.1.tar.gz
Windows binaries: r-prerel: LocaTT_1.1.1.zip, r-release: LocaTT_1.1.1.zip, r-oldrel: LocaTT_1.1.1.zip
macOS binaries: r-prerel (arm64): LocaTT_1.1.1.tgz, r-release (arm64): LocaTT_1.1.1.tgz, r-oldrel (arm64): LocaTT_1.1.1.tgz, r-prerel (x86_64): LocaTT_1.1.1.tgz, r-release (x86_64): LocaTT_1.1.1.tgz

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