MKomics: Omics Data Analysis

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007> ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Version: 0.7
Depends: R (≥ 3.5.0)
Imports: stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma, grid, circlize, ComplexHeatmap
Suggests: knitr, rmarkdown
Published: 2021-08-08
DOI: 10.32614/CRAN.package.MKomics
Author: Matthias Kohl ORCID iD [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl at>
License: LGPL-3
NeedsCompilation: no
Citation: MKomics citation info
Materials: NEWS
CRAN checks: MKomics results


Reference manual: MKomics.pdf
Vignettes: MKomics


Package source: MKomics_0.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): MKomics_0.7.tgz, r-oldrel (arm64): MKomics_0.7.tgz, r-release (x86_64): MKomics_0.7.tgz, r-oldrel (x86_64): MKomics_0.7.tgz
Old sources: MKomics archive

Reverse dependencies:

Reverse suggests: RFLPtools


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