MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Version: 1.1.1
Depends: R (≥ 3.1.0)
Imports: reshape2, plyr, dplyr, data.table, ggplot2, Cairo
Suggests: testthat
Published: 2018-02-19
Author: Pavel Senin [aut, cre]
Maintainer: Pavel Senin <senin at hawaii.edu>
BugReports: https://github.com/seninp-bioinfo/MetaComp/issues
License: GPL-2
URL: https://github.com/seninp-bioinfo/MetaComp
NeedsCompilation: no
Materials: README
CRAN checks: MetaComp results

Downloads:

Reference manual: MetaComp.pdf
Package source: MetaComp_1.1.1.tar.gz
Windows binaries: r-devel: MetaComp_1.1.1.zip, r-release: MetaComp_1.1.1.zip, r-oldrel: MetaComp_1.1.1.zip
OS X El Capitan binaries: r-release: MetaComp_1.1.1.tgz
OS X Mavericks binaries: r-oldrel: MetaComp_1.0.1.tgz
Old sources: MetaComp archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MetaComp to link to this page.