MixSIAR: Bayesian Mixing Models in R

Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR'.

Version: 3.1.12
Depends: R (≥ 3.6.0)
Imports: ggplot2 (≥ 3.3.0), R2jags (≥ 0.5-7), MASS (≥ 7.3), RColorBrewer (≥ 1.1), reshape (≥ 0.8.7), reshape2 (≥ 1.4.3), lattice (≥ 0.20-35), MCMCpack (≥ 1.4-2), ggmcmc (≥ 1.1), coda (≥ 0.19-1), loo (≥ 2.0.0), bayesplot (≥ 1.4.0), splancs (≥ 2.01-40)
Suggests: knitr, rmarkdown, testthat
Published: 2020-10-20
Author: Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb]
Maintainer: Brian Stock <bstock09 at gmail.com>
BugReports: https://github.com/brianstock/MixSIAR/issues
License: GPL-3
URL: https://github.com/brianstock/MixSIAR
NeedsCompilation: no
SystemRequirements: JAGS (>= 4.3)
Citation: MixSIAR citation info
Materials: README NEWS
CRAN checks: MixSIAR results

Downloads:

Reference manual: MixSIAR.pdf
Vignettes: Ex 6: Cladocera
Ex 2: Geese
Ex 5: Isopod
Ex 4: Killer Whale
Ex 3: Lake
Ex 1: Wolves
Package source: MixSIAR_3.1.12.tar.gz
Windows binaries: r-devel: MixSIAR_3.1.12.zip, r-release: MixSIAR_3.1.12.zip, r-oldrel: MixSIAR_3.1.12.zip
macOS binaries: r-release: MixSIAR_3.1.12.tgz, r-oldrel: MixSIAR_3.1.12.tgz
Old sources: MixSIAR archive

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