TipDatingBeast: Using Tip Dates with Phylogenetic Trees in BEAST

Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.

Version: 1.1-0
Depends: R (≥ 3.1.2)
Imports: mclust, TeachingDemos, DescTools, utils, stats
Published: 2019-10-22
DOI: 10.32614/CRAN.package.TipDatingBeast
Author: Adrien Rieux, Camilo Khatchikian
Maintainer: Camilo Khatchikian <ckhatchikian at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://www.r-project.org
NeedsCompilation: no
CRAN checks: TipDatingBeast results


Reference manual: TipDatingBeast.pdf


Package source: TipDatingBeast_1.1-0.tar.gz
Windows binaries: r-devel: TipDatingBeast_1.1-0.zip, r-release: TipDatingBeast_1.1-0.zip, r-oldrel: TipDatingBeast_1.1-0.zip
macOS binaries: r-release (arm64): TipDatingBeast_1.1-0.tgz, r-oldrel (arm64): TipDatingBeast_1.1-0.tgz, r-release (x86_64): TipDatingBeast_1.1-0.tgz, r-oldrel (x86_64): TipDatingBeast_1.1-0.tgz
Old sources: TipDatingBeast archive


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