ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data

Contains a set of functions to perform large-scale analysis of toxicogenomic data. A member of the Benjamin Haibe-Kains (BHK) lab's genomics (Gx) suite of software, this package provides a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxico-genomic data. This package is in early release, and more features will be added over the next few months. For more information please see the included documentation, vignette, as well as: Ruede-Zarate, H.A. et al (2017) <doi:10.1371/journal.pone.0176284>, Caiment, F. et al (2014) <doi:10.1093/carcin/bgt278>.

Version: 0.0.1
Depends: R (≥ 3.5.0), CoreGx
Imports: SummarizedExperiment, Biobase, RColorBrewer, caTools, magicaxis, methods, reshape2, scales
Suggests: testthat (≥ 2.1.0), rmarkdown, knitr, knitcitations, tinytex, devtools, PharmacoGx, xtable
Published: 2019-11-15
Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem1 [aut], Petr Smirnov [aut], Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: ToxicoGx results

Downloads:

Reference manual: ToxicoGx.pdf
Vignettes: ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis
Package source: ToxicoGx_0.0.1.tar.gz
Windows binaries: r-devel: ToxicoGx_0.0.1.zip, r-devel-gcc8: ToxicoGx_0.0.1.zip, r-release: ToxicoGx_0.0.1.zip, r-oldrel: ToxicoGx_0.0.1.zip
OS X binaries: r-release: not available, r-oldrel: not available

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