backbone: Extracts the Backbone from Weighted Graphs

Provides methods for extracting from a weighted graph a binary or signed backbone that retains only the significant edges. The user may input a weighted graph, or a bipartite graph from which a weighted graph is first constructed via projection. Backbone extraction methods include the stochastic degree sequence model (SDSM; Neal, Z. P. (2014). <doi:10.1016/j.socnet.2014.06.001>), the fixed degree sequence model (FDSM; Zweig, K. A., and Kaufmann, M. (2011). <doi:10.1007/s13278-011-0021-0>), the fixed row model (FRM; Neal, Z. P. (2013). <doi:10.1007/s13278-013-0107-y>), the fixed column model (FCM; Neal, Domagalski, and Sagan (2021). <arXiv:2105.13396>), the fixed fill model (FFM; Neal, Domagalski, and Sagan (2021). <arXiv:2105.13396>), and a universal threshold method.

Version: 1.5.1
Depends: R (≥ 2.10)
Imports: Matrix, methods, stats, utils, igraph, network, PoissonBinomial
Suggests: knitr, rmarkdown, testthat
Published: 2021-09-17
Author: Zachary Neal [aut, cre], Rachel Domagalski [aut], Bruce Sagan [aut]
Maintainer: Zachary Neal <zpneal at msu.edu>
BugReports: https://github.com/domagal9/backbone/issues
License: GPL-3
URL: https://www.zacharyneal.com/backbone, https://github.com/domagal9/backbone
NeedsCompilation: no
Citation: backbone citation info
Materials: README NEWS
CRAN checks: backbone results

Downloads:

Reference manual: backbone.pdf
Vignettes: backbone
Package source: backbone_1.5.1.tar.gz
Windows binaries: r-devel: backbone_1.5.0.zip, r-release: backbone_1.5.0.zip, r-oldrel: backbone_1.5.0.zip
macOS binaries: r-release (arm64): backbone_1.5.0.tgz, r-release (x86_64): backbone_1.5.0.tgz, r-oldrel: backbone_1.5.0.tgz
Old sources: backbone archive

Reverse dependencies:

Reverse imports: GeneTonic

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