bibliospec: Reading Mass Spectrometric Search Results

R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference.

Version: 0.0.4
Depends: R (≥ 3.2), methods, DBI, RSQLite
Suggests: testthat, parallel
Published: 2016-07-01
Author: Christian Panse, Witold E. Wolski
Maintainer: Witold E. Wolski <wew at fgcz.ethz.ch>
BugReports: https://github.com/protViz/bibliospec/issues
License: GPL-3
URL: https://github.com/protViz/bibliospec
NeedsCompilation: no
Materials: README NEWS
CRAN checks: bibliospec results

Downloads:

Reference manual: bibliospec.pdf
Package source: bibliospec_0.0.4.tar.gz
Windows binaries: r-devel: bibliospec_0.0.4.zip, r-release: bibliospec_0.0.4.zip, r-oldrel: bibliospec_0.0.4.zip
OS X El Capitan binaries: r-release: bibliospec_0.0.4.tgz
OS X Mavericks binaries: r-oldrel: bibliospec_0.0.4.tgz

Linking:

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