#bioimagetools

Synopsis

bioimagetools is an R package for working with images in 3D and 4D, mostly for biology/microscopy.

Installation

The stable version is available on CRAN:

setRepositories(ind=c(1,2))
install.packages(c("bioimagetools"))

The developement version is available on github:

setRepositories(ind=c(1,2))
install.packages(c("devtools","tiff","EBImage"))
devtools::install_github("volkerschmid/bioimagetools")

You may need to install additional libraries on your OS before you can install bioimagetools. E.g. on Ubuntu/Debian systems, please execute

sudo apt install libssl-dev libcurl4-openssl-dev libtiff5-dev libfftw3-dev

in the terminal before installing bioimagetools.

Contributors

This package is developed at the BioImaging group at the Department of Statistics, in cooperation with the Biocenter, Department of Biology II, both at LMU Munich.