clusterhap: Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Version: 0.1
Depends: R (≥ 2.10)
Imports: graphics, utils
Suggests: knitr, rmarkdown, testthat
Published: 2016-05-16
Author: Gaston Quero and Sebastian Simondi , with contributions from Victoria Bonnecarrere and Lucia Gutierrez
Maintainer: Gaston Quero <gastonquero at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: clusterhap results

Downloads:

Reference manual: clusterhap.pdf
Vignettes: Use clusterhap
Package source: clusterhap_0.1.tar.gz
Windows binaries: r-devel: clusterhap_0.1.zip, r-release: clusterhap_0.1.zip, r-oldrel: clusterhap_0.1.zip
OS X binaries: r-release: clusterhap_0.1.tgz, r-oldrel: not available

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