func2vis: Clean and Visualize Over Expression Results from
'ConsensusPathDB'
Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms,
protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB'
from gene set over-expression analysis. Performs clustering of pathway based on similarity
of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA)
when up and down regulated genes are known. The methods are described in a paper currently
submitted by Orecchioni et al, 2020 in Nanoscale.
| Version: |
1.0-2 |
| Depends: |
ggplot2, igraph, devtools, ggrepel, grDevices, R (≥ 3.6) |
| Published: |
2022-08-29 |
| Author: |
Raghvendra Mall [aut, cre] |
| Maintainer: |
Raghvendra Mall <raghvendra5688 at gmail.com> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
yes |
| CRAN checks: |
func2vis results |
Documentation:
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