Provides functions to have visualization and clean-up of enriched gene ontologies (GO) terms, protein complexes and pathways (obtained from multiple databases) using 'ConsensusPathDB' from gene set over-expression analysis. Performs clustering of pathway based on similarity of over-expressed gene sets and visualizations similar to Ingenuity Pathway Analysis (IPA) when up and down regulated genes are known. The methods are described in a paper currently submitted by Orecchioni et al, 2020 in Nanoscale.
| Version: | 1.0-1 |
| Depends: | ggplot2, igraph, devtools, ggrepel, grDevices, R (≥ 3.6) |
| Published: | 2020-08-10 |
| Author: | Raghvendra Mall [aut, cre] |
| Maintainer: | Raghvendra Mall <rmall at hbku.edu.qa> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| CRAN checks: | func2vis results |
| Reference manual: | func2vis.pdf |
| Package source: | func2vis_1.0-1.tar.gz |
| Windows binaries: | r-devel: func2vis_1.0-1.zip, r-release: func2vis_1.0-1.zip, r-oldrel: func2vis_1.0-1.zip |
| macOS binaries: | r-release: func2vis_1.0-1.tgz, r-oldrel: func2vis_1.0-1.tgz |
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