gphmm

Generalized Pair Hidden Markov Model (GPHMM)

Project Status: Active - The project has reached a stable, usable state and is being actively developed. Travis-CI Build Status

This package trains a GPHMM and computes GPHMM probabilities.

The model will be described in details in a paper … coming soon. In the meantime, please don’t hesitate to email me if you have questions.

Installation

We are in the process of submitting the package to CRAN. In the meantime, you can install the development version of gphmm from GitHub with the following two lines of code.

library(devtools)
install_github("fperraudeau/gphmm")