phylodyn: Statistical Tools for Phylodynamics

Statistical tools for reconstructing population size from genetic sequence data.

Version: 0.9.0
Depends: R (≥ 2.13.0)
Imports: ape, spam
Suggests: INLA, knitr, testthat, rmarkdown
Published: 2017-05-03
Author: Michael Karcher, Julia Palacios, Shiwei Lan, Vladimir Minin
Maintainer: Michael Karcher <mkarcher at uw.edu>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: phylodyn results

Downloads:

Reference manual: phylodyn.pdf
Vignettes: Phylodyn from local genealogies
Producing results and figures using BNPR/MCMC
New York Influenza
Regional Influenza
Regional Seasonality
Simple BNPR Vignette
Simple BNPR/MCMC Vignette
Simulation
Package source: phylodyn_0.9.0.tar.gz
Windows binaries: r-devel: phylodyn_0.9.0.zip, r-release: phylodyn_0.9.0.zip, r-oldrel: phylodyn_0.9.0.zip
OS X El Capitan binaries: r-release: phylodyn_0.9.0.tgz
OS X Mavericks binaries: r-oldrel: phylodyn_0.9.0.tgz

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