phylotaR: Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

A pipeline for the identification, within taxonomic groups, of orthologous sequence clusters from 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a phylogenetic analysis. The pipeline depends on a local alignment search tool and is, therefore, not dependent on differences in gene naming conventions and naming errors.

Version: 1.0.0
Depends: R (≥ 3.3.0), methods
Imports: igraph, rentrez, XML, ggplot2, sys, treeman, treemapify, R.utils
Suggests: testthat, knitr, rmarkdown
Published: 2018-07-31
Author: Hannes Hettling [aut], Rutger Vos [aut], Alexander Zizka [aut], Dom Bennett [aut, cre], Alexandre Antonelli [aut]
Maintainer: Dom Bennett <dominic.john.bennett at gmail.com>
BugReports: https://github.com/ropensci/phylotaR/issues
License: MIT + file LICENSE
URL: https://github.com/ropensci/phylotaR#readme
NeedsCompilation: no
SystemRequirements: BLAST+ (>=2.0)
Materials: README
CRAN checks: phylotaR results

Downloads:

Reference manual: phylotaR.pdf
Vignettes: phylotaR Tutorial
Package source: phylotaR_1.0.0.tar.gz
Windows binaries: r-devel: phylotaR_1.0.0.zip, r-devel-gcc8: phylotaR_1.0.0.zip, r-release: phylotaR_1.0.0.zip, r-oldrel: phylotaR_1.0.0.zip
OS X binaries: r-release: phylotaR_1.0.0.tgz, r-oldrel: phylotaR_1.0.0.tgz

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