Package: pulseTD

Type: Package

Author: XinWang

Maintainer: The package maintainer xindd_2014@163.com

Title: Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data

Version: 0.1.0

Date: 2019-5-5

Description: This package, based on 4sU-seq data and RNA-seq data, analyzes the transcription, processing and degradation rates of genes. pulseTD can not only recognize the transcriptional dynamic rate of the measurement time points, but also obtain continuous changes in transcriptional dynamics. More importantly, it is able to predict the trend of mRNA transcription and expression changes in the future. In terms of performance, pulseTD has better robustness and accuracy than other methods.

License: GPL-2

Encoding: UTF-8

Depends: R (>= 3.4.0)

Imports: AnnotationDbi,SummarizedExperiment,Rsamtools,Biobase,S4Vectors,methods,parallel,GenomicFeatures, ggplot2, grid, GenomicAlignments

RoxygenNote: 6.1.1

Suggests: knitr, rmarkdown, TxDb.Hsapiens.UCSC.hg19.knownGene

VignetteBuilder: knitr