refGenome: Gene and Splice Site Annotation Using Annotation Data from 'Ensembl' and 'UCSC' Genome Browsers

Contains functionalities for importing and managing downloaded genome annotation data from 'Ensembl' genome browser (European Bioinformatics Institute, <https://www.ensembl.org>) and from 'UCSC' genome browser (University of California, Santa Cruz, <https://genome.ucsc.edu/>) and annotation routines for genomic positions and splice site positions.

Version: 1.7.7
Depends: methods, doBy, RSQLite
Imports: DBI
Published: 2019-05-22
Author: Wolfgang Kaisers [aut, cre]
Maintainer: Wolfgang Kaisers <wolfgang.kaisers at gmail.com>
License: GPL-2
NeedsCompilation: yes
Materials: NEWS ChangeLog
CRAN checks: refGenome results

Downloads:

Reference manual: refGenome.pdf
Vignettes: readGTF
Introduction
Package source: refGenome_1.7.7.tar.gz
Windows binaries: r-devel: refGenome_1.7.7.zip, r-devel-gcc8: refGenome_1.7.7.zip, r-release: refGenome_1.7.7.zip, r-oldrel: refGenome_1.7.7.zip
OS X binaries: r-release: refGenome_1.7.7.tgz, r-oldrel: refGenome_1.7.7.tgz
Old sources: refGenome archive

Reverse dependencies:

Reverse depends: rbamtools

Linking:

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