spAbundance: Univariate and Multivariate Spatial Modeling of Species Abundance

Fits single-species (univariate) and multi-species (multivariate) non-spatial and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs). Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Fits single-species and multi-species spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson, Negative Binomial), N-mixture models (Royle 2004 <doi:10.1111/j.0006-341X.2004.00142.x>) and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <doi:10.1890/03-3127>). Multi-species spatial models are fit using a spatial factor modeling approach with NNGPs for computational efficiency.

Version: 0.1.0
Depends: R (≥ 3.5.0)
Imports: stats, coda, abind, RANN, lme4, foreach, doParallel, methods
Suggests: testthat
Published: 2023-10-20
Author: Jeffrey Doser [aut, cre], Andrew Finley [aut]
Maintainer: Jeffrey Doser <doserjef at msu.edu>
BugReports: https://github.com/doserjef/spAbundance/issues
License: GPL (≥ 3)
URL: https://www.jeffdoser.com/files/spabundance-web
NeedsCompilation: yes
Citation: spAbundance citation info
Materials: README NEWS
CRAN checks: spAbundance results

Documentation:

Reference manual: spAbundance.pdf

Downloads:

Package source: spAbundance_0.1.0.tar.gz
Windows binaries: r-devel: spAbundance_0.1.0.zip, r-release: spAbundance_0.1.0.zip, r-oldrel: spAbundance_0.1.0.zip
macOS binaries: r-release (arm64): spAbundance_0.1.0.tgz, r-oldrel (arm64): spAbundance_0.1.0.tgz, r-release (x86_64): spAbundance_0.1.0.tgz

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