survival: Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Version: 2.41-3
Priority: recommended
Depends: R (≥ 2.13.0)
Imports: graphics, Matrix, methods, splines, stats, utils
Published: 2017-04-04
Author: Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry at mayo.edu>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2)]
Copyright: see file COPYRIGHTS
URL: https://github.com/therneau/survival
NeedsCompilation: yes
Citation: survival citation info
Materials: NEWS
In views: ClinicalTrials, Econometrics, SocialSciences, Survival
CRAN checks: survival results

Downloads:

Reference manual: survival.pdf
Vignettes: Adjusted Survival Curves
Multi-state models and competing risks
Multi-state example
Splines, plots, and interactions
Cox models and “type 3” Tests
Roundoff error and tied times
Using Time Dependent Covariates
Validation
Package source: survival_2.41-3.tar.gz
Windows binaries: r-devel: survival_2.41-3.zip, r-release: survival_2.41-3.zip, r-oldrel: survival_2.41-3.zip
OS X El Capitan binaries: r-release: survival_2.41-3.tgz
OS X Mavericks binaries: r-oldrel: survival_2.41-3.tgz
Old sources: survival archive

Reverse dependencies:

Reverse depends: AdjBQR, AER, AF, ahaz, AHR, AIM, anoint, APtools, attribrisk, BART, bayesDP, BayesMixSurv, bayesSurv, bhm, BivarP, BMA, bshazard, BuyseTest, carcass, cchs, cmprsk, CNVassoc, coin, CompetingRisk, compound.Cox, cond, CoxBoost, coxinterval, coxme, coxphSGD, coxphw, CoxRidge, coxrobust, CPE, crossmatch, crrp, crrSC, csampling, ctqr, currentSurvival, distcomp, DPpackage, drgee, dynamichazard, DynNom, dynpred, dynsurv, eha, ELYP, epiDisplay, epiR, etm, FamEvent, fitdistrplus, flexPM, flexrsurv, flexsurv, flexsurvcure, frailtyEM, frailtyHL, frailtypack, frailtySurv, gamlss.cens, gamlss.nl, gbm, gcerisk, geneSignatureFinder, glmpath, globalboosttest, glrt, goftte, GORCure, greyzoneSurv, GSAgm, GSED, gte, gtx, HapEstXXR, haplo.ccs, Hmisc, iBST, ICBayes, icenReg, ICGOR, idmTPreg, IDPSurvival, imputeYn, InferenceSMR, InformativeCensoring, interval, invGauss, ipflasso, IPWsurvival, isoph, JM, JMbayes, joineR, joineRML, joint.Cox, JointModel, JointRegBC, JSM, kaps, kin.cohort, km.ci, kmconfband, lava.tobit, lcmm, LCox, linERR, LncMod, LogicReg, luca, MapGAM, marg, MetaDE, mexhaz, mfp, mhurdle, MiRKAT, missDeaths, mma, mmc, MMMS, MPLikelihoodWB, MRH, mRMRe, MRsurv, MST, mstate, multcomp, multipleNCC, multistate, NADA, NestedCohort, nlreg, NPHMC, nricens, NSM3, OIsurv, optmatch, OrdFacReg, ordinalgmifs, OTRselect, OutlierDC, p3state.msm, packHV, paf, pamr, parfm, partDSA, pbatR, pch, penalized, PenCoxFrail, peperr, permGPU, permGS, PHeval, phmm, PIGE, plac, plRasch, PRIMsrc, prognosticROC, PwrGSD, QoLR, qrcm, QualInt, RcmdrPlugin.coin, RcmdrPlugin.survival, relsurv, remix, risksetROC, rms, RobustAFT, ROC632, ROCt, RPCLR, rprev, rsig, rstpm2, season, seawaveQ, selectiveInference, SemiCompRisks, seqDesign, seqMeta, SIMMS, simMSM, smcure, smoothHR, smoothSurv, SNPassoc, sp23design, speff2trial, SPREDA, sprinter, sptm, ssym, STAND, STAR, stepp, SubgrpID, superpc, survAccuracyMeasures, survAUC, survC1, survexp.fr, survey, Survgini, survIDINRI, survivalMPL, survivalsvm, survJamda, survMisc, SurvRank, SurvRegCensCov, survRM2, survSNP, tdROC, TH.data, threg, thregI, time2event, timereg, tnet, TransModel, uniah, uniCox, WPC, Zelig
Reverse imports: addhazard, aftgee, AICcmodavg, AIM, bamlss, beanz, BeSS, BGPhazard, binequality, Biograph, biospear, BSGW, c060, cancerGI, casebase, censCov, CFC, cg, chngpt, cmprskQR, compareGroups, concreg, condSURV, controlTest, Counterfactual, coxphf, coxphMIC, CP, CPsurv, DStree, DTR, DWreg, EGRET, EL2Surv, EMA, Epi, epoc, factorMerger, FHtest, fmrs, fragilityindex, gamlss, ggRandomForests, GJRM, glmBfp, greport, gyriq, hdnom, hds, hoa, idem, ilc, intercure, ipred, ipw, kmi, landest, landpred, lava, lodGWAS, LTRCtrees, MAGNAMWAR, mboost, Mediana, mets, mice, miCoPTCM, MIICD, mixPHM, mixtools, mlr, mlt, mombf, momentuHMM, moonBook, mpr, msaenet, msm, msmtools, muhaz, MXM, My.stepwise, nima, nparsurv, nsROC, numKM, pact, party, partykit, pec, permDep, personalized, plsRcox, popEpi, powerSurvEpi, prioritylasso, prodlim, pseval, PTE, PWEALL, quickReg, rankhazard, RcmdrPlugin.KMggplot2, rcure, ReIns, reportRx, reReg, riskRegression, RItools, rld, robustloggamma, rolr, rpsftm, rpst, Rsurrogate, RVFam, SEERaBomb, sensitivityPStrat, shrink, SIDES, simexaft, SimHaz, simPH, SIS, skpr, smcfcs, SMPracticals, spatsurv, spBayesSurv, spef, SSRMST, StatCharrms, stdReg, stpm, strataG, Surrogate, surrosurv, surv2sampleComp, survAWKMT2, SurvCorr, SurvDisc, survidm, survivALL, survminer, survutils, SvyNom, tab, TBSSurvival, TraMineRextras, tranSurv, TreatmentSelection, TwoPhaseInd, TwoStepCLogit, uwIntroStats, valorate, VarReg, vennLasso, VRPM, WCE, WGCNA, WLreg, WRTDStidal, xpose4
Reverse suggests: agridat, aplore3, arsenal, ARTool, ascii, BB, bife, bnnSurvival, boot, bpcp, broom, BSquare, bujar, CALIBERrfimpute, car, catspec, choplump, climbeR, clinfun, confSAM, coreSim, Cyclops, DAAG, dawai, desctable, discSurv, dlnm, dnet, doBy, DySeq, emil, epade, epifit, exactRankTests, FastKM, flexmix, forestmodel, FRESA.CAD, gamair, gamboostLSS, gamlss.inf, gap, genSurv, GGally, ggfortify, glmnet, glmulti, gof, Greg, grImport, grpreg, heemod, highcharter, homomorpheR, HSAUR, HSAUR2, HSAUR3, HydeNet, ISwR, itree, kyotil, lmtest, LogrankA, lsmeans, lss, MASS, maxstat, mc2d, mediation, metafor, MetaQC, mgcv, mi, mistat, mixor, mlt.docreg, MuMIn, ncvreg, netdiffuseR, npsm, nutshell, opera, optband, outreg, pander, pensim, ph2bye, ph2mult, pmml, PResiduals, purge, quantreg, qwraps2, R2HTML, randomForestSRC, ranger, rattle, reporttools, RLT, rpart, RVAideMemoire, sandwich, simstudy, simsurv, SMIR, srvyr, subscreen, support.BWS, support.BWS2, support.CEs, survtmle, SweaveListingUtils, tableone, texreg, timeROC, truncreg, Umpire, visreg, wally, xtable, ztable
Reverse enhances: denstrip, papeR, prediction, stargazer

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