syntenyPlotteR: Genome Synteny Visualization

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Version: 1.0.0
Imports: ggplot2, stringr, utils
Suggests: knitr, rmarkdown
Published: 2023-10-03
Author: Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut]
Maintainer: Marta Farre <m.farre-belmonte at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: syntenyPlotteR citation info
Materials: README NEWS
CRAN checks: syntenyPlotteR results


Reference manual: syntenyPlotteR.pdf
Vignettes: SyntenyPlotteR - a tool for genome synteny visualisation


Package source: syntenyPlotteR_1.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz


Please use the canonical form to link to this page.