umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' (<https://github.com/stahlberggroup/umierrorcorrect>).

Version: 1.0.0
Depends: R (≥ 4.1.0)
Imports: BiocManager, dplyr (≥ 0.7.5), DT (≥ 0.19), forcats (≥ 0.5.0), ggplot2 (≥ 2.2.1), graphics, grDevices, gridExtra (≥ 2.3), magrittr (≥ 1.5), methods, pheatmap (≥ 1.0.12), plotly (≥ 4.9.2.1), readr (≥ 1.1.1), Rsamtools (≥ 1.32.3), scales (≥ 1.1.0), shiny (≥ 1.7.1), shinydashboard (≥ 0.7.2), shinyFiles (≥ 0.9.0), shinyWidgets (≥ 0.6.2), stats, stringr (≥ 1.4.0), tibble (≥ 1.4.2), tidyr (≥ 0.8.1), utils, viridis (≥ 0.5.1)
Suggests: knitr (≥ 1.27), rmarkdown (≥ 2.1)
Published: 2021-11-25
Author: Stefan Filges ORCID iD [aut, cre], Gustav Johansson [ctb]
Maintainer: Stefan Filges <stefan.filges at gu.se>
BugReports: https://github.com/sfilges/umiAnalyzer/issues
License: GPL-3
URL: https://github.com/sfilges/umiAnalyzer
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: umiAnalyzer results

Documentation:

Reference manual: umiAnalyzer.pdf
Vignettes: umiAnalyzer vignette

Downloads:

Package source: umiAnalyzer_1.0.0.tar.gz
Windows binaries: r-devel: umiAnalyzer_1.0.0.zip, r-release: umiAnalyzer_1.0.0.zip, r-oldrel: not available
macOS binaries: r-release (arm64): umiAnalyzer_1.0.0.tgz, r-release (x86_64): umiAnalyzer_1.0.0.tgz, r-oldrel: not available

Linking:

Please use the canonical form https://CRAN.R-project.org/package=umiAnalyzer to link to this page.