ypssc: Yeast-Proteome Secondary-Structure Calculator

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

Version: 1.1.0
Depends: R (≥ 2.10)
Imports: spelling, dplyr, readxl, stringr, eulerr, Peptides, utils, svDialogs, tcltk
Suggests: rmarkdown, testthat (≥ 3.0.0)
Published: 2021-11-27
DOI: 10.32614/CRAN.package.ypssc
Author: Sajad Tasharofi [aut, cph], Shashank Kumbhare [aut, cre, cph], Bent Petersen [aut], Morteza Khaledi [aut], Amir Shahmoradi [aut]
Maintainer: Shashank Kumbhare <shashank.kumbhare at mavs.uta.edu>
License: GPL (≥ 3)
NeedsCompilation: no
In views: Omics
CRAN checks: ypssc results


Reference manual: ypssc.pdf


Package source: ypssc_1.1.0.tar.gz
Windows binaries: r-devel: ypssc_1.1.0.zip, r-release: ypssc_1.1.0.zip, r-oldrel: ypssc_1.1.0.zip
macOS binaries: r-release (arm64): ypssc_1.1.0.tgz, r-oldrel (arm64): ypssc_1.1.0.tgz, r-release (x86_64): ypssc_1.1.0.tgz, r-oldrel (x86_64): ypssc_1.1.0.tgz
Old sources: ypssc archive


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